Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VECKNNIADLLPCQAAAQS----ETS---------TPSTECCTAVGKFKDDPACLCSTIAAAQAA------GFT-----IDAPVAATIPKRCKLDGYPTSCSKSK
2LVF Chain:A ((17-101))
--------MLSHCRMYMRQQMEESTYQTMPRRGMEPHMSECCEQLEGM--DESCRCEGLRMMMRMMQQKEMQPRGEQMRRMMRLAENIPSRCNLS----------
General information:
TITO was launched using:
RESULT:
Template:
2LVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -16588 for 341 contacts (-48.6/contact) +
2D Compatibility (PS) -6444 + (NN) -819 + (LL) 524
1D Compatibility (HY) -3600 + (ID) 750
Total energy: -27677.0 ( -81.16 by residue)
QMean score : 0.323
(partial model without unconserved sides chains):
PDB file :
Tito_2LVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LVF-query.scw
PDB file :
Tito_Scwrl_2LVF.pdb
: