Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
APSAAECKEERR-LAINACKPVVYGK--------D----P-----------SPACCERARVTHIECVCPVITPKLAALI------------DVNRAVRLIEGCGRKVPRHYKCGSITTP
1PSY Chain:A ((16-116))
----QQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--------------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21606 for 470 contacts (-46.0/contact) +
2D Compatibility (PS) -6583 + (NN) -718 + (LL) 560
1D Compatibility (HY) -1600 + (ID) 750
Total energy: -30697.0 ( -65.31 by residue)
QMean score : 0.367
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: