Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
DMSPTECKEERK--LAGNACRPMLYGQ-----N---------PSANCCQRIRVTHVECICPYVSPKVASIV-----RAYGLNKLIKKIEGCGRAIPHNFKCGSITTP
1S6D Chain:A ((9-97))
----SGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCMCPAIMMMLNEPMWIRMRDQ-VMSMAHNLPIECNLM-------------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -15509 for 473 contacts (-32.8/contact) +
2D Compatibility (PS) -6663 + (NN) 1061 + (LL) 304
1D Compatibility (HY) -3200 + (ID) 500
Total energy: -24507.0 ( -51.81 by residue)
QMean score : 0.291
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: