Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVTSCGPVVTSLYPCVSYIMNG---GN-T----------------VPAAQCCNGIRNLNTMAQTTNDRRAVCTCIKNAVSQSG--FSYTN----LNLNLAAGLPRKCGVNIPYQISPNTDCNSVH
1PSY Chain:A ((25-121))
---------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMRQ---------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45795 for 528 contacts (-86.7/contact) +
2D Compatibility (PS) -7145 + (NN) -2003 + (LL) 1020
1D Compatibility (HY) -1200 + (ID) 700
Total energy: -55823.0 ( -105.73 by residue)
QMean score : 0.238
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: