Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VITCPDADITLKSCLPYVAHP---TQ-------WP-----------PLECCTAVLGLTARAVTREDRQAVCKCLLGLMNGI------PGL----DLTAFAAVPILCAANIGYIIRPNMDCNSVP
1PSY Chain:A ((25-120))
--------KDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQV--------RDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGV--RCMR----------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -79267 for 462 contacts (-171.6/contact) +
2D Compatibility (PS) -6693 + (NN) -1987 + (LL) 1380
1D Compatibility (HY) -400 + (ID) 550
Total energy: -87517.0 ( -189.43 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: