Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPVCPLNQSELGICVNVLGLISITTSNAAQCCSILAGLNNVSLVSVCACEAVRLNILNLLGITVNLNLRLNGLLGLCRLPVQPGFNCLL
1PK1 Chain:B ((11-80))
----RSQPIDWT-IEEVIQYIESNDNSLAVHGDLFRK-HEIDGKALLRLN--SERMMKYMGLKLGPALKICNLVNKVN-----------
General information:
TITO was launched using:
RESULT:
Template:
1PK1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -75584 for 494 contacts (-153.0/contact) +
2D Compatibility (PS) -6906 + (NN) -2978 + (LL) 1440
1D Compatibility (HY) -5200 + (ID) 300
Total energy: -89528.0 ( -181.23 by residue)
QMean score : 0.273
(partial model without unconserved sides chains):
PDB file :
Tito_1PK1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PK1-query.scw
PDB file :
Tito_Scwrl_1PK1.pdb
: