Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
QPVCPLNRSDLGICVNVLGLISLTTSNVARCCSILAGLNNTP-----LVSVCACEAVRLNILNLLGITVNLNLRLNGLLGLCRLPVQ----PGFNCLL
1AFH Chain:A ((3-90))
--SCGQVASAIAPCISYARGQ--GSGPSAGCCSGVRSLNNAARTTADRRAACNC--LKNAAAG-VS-GLNAGNAA-SIPSKCGVSIPYTISTSTDCS-
General information:
TITO was launched using:
RESULT:
Template:
1AFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83457 for 591 contacts (-141.2/contact) +
2D Compatibility (PS) -8075 + (NN) -1959 + (LL) 852
1D Compatibility (HY) 800 + (ID) 750
Total energy: -92589.0 ( -156.66 by residue)
QMean score : 0.252
(partial model without unconserved sides chains):
PDB file :
Tito_1AFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AFH-query.scw
PDB file :
Tito_Scwrl_1AFH.pdb
: