Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTDYNINLTDSALKKIHSLVEQEEDKSSILRVAV---------SGGGCSGFKYNFLMDQIDKNLSLSDDDDDDEFDDEDDDDDESEDYRSRSSFSRKSKDIVINDKDG-NPVLMVDNCSVKFLN-NSIIDYTENLSGSGFQVKNALAKSQCGCGNSFSV
2QGO Chain:A ((4-105))
----LNIKFTDNAVDYLKRREIL----DKILILITDDGGGKYSI--------HFSIIWLDKVDPD----------------------------------YPVKI--ANEQNVKIYTSDFDKTMLGPNMVMDYN----AGSLSLSSDEGLLDGSVDIGNGA
General information:
TITO was launched using:
RESULT:
Template:
2QGO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35879 for 542 contacts (-66.2/contact) +
2D Compatibility (PS) -8683 + (NN) -2740 + (LL) -164
1D Compatibility (HY) -5600 + (ID) 650
Total energy: -53716.0 ( -99.11 by residue)
QMean score : 0.236
(partial model without unconserved sides chains):
PDB file :
Tito_2QGO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QGO-query.scw
PDB file :
Tito_Scwrl_2QGO.pdb
: