Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSILLELQFYLSLPHIFSYQQMHKNEEISEAKTSRNAEEVKEIVKTQLEGLKQLKKQLKQKLGV
2DJV Chain:A ((28-61))
--------------------------IVRELKAQKAD---KNEVAAEVAKLLDLKKQLAVAEGK
General information:
TITO was launched using:
RESULT:
Template:
2DJV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 8180 for 160 contacts (51.1/contact) +
2D Compatibility (PS) -3704 + (NN) -3163 + (LL) 2968
1D Compatibility (HY) -1600 + (ID) 550
Total energy: 2131.0 ( 13.32 by residue)
QMean score : 0.732
(partial model without unconserved sides chains):
PDB file :
Tito_2DJV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DJV-query.scw
PDB file :
Tito_Scwrl_2DJV.pdb
: