Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------MWFYKLPSTNILDTQLTDVTTAPVVKLNILIITSNSTVVPVDVELGNLLCL-------QVMQARNISDGIMWGYTGAVILHVI
2JD3 Chain:A ((6-95))
KRKKYTLYLHPEKAADFQTLEAIESVPRSERGELFRNAFISGMALHQLDPRLPVLLTAILSEEFSADQVVTLLSQTTGWKPSQADIRAVL
General information:
TITO was launched using:
RESULT:
Template:
2JD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21325 for 377 contacts (-56.6/contact) +
2D Compatibility (PS) -7452 + (NN) 2503 + (LL) 0
1D Compatibility (HY) 2000 + (ID) 600
Total energy: -24874.0 ( -65.98 by residue)
QMean score : -0.055
(partial model without unconserved sides chains):
PDB file :
Tito_2JD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JD3-query.scw
PDB file :
Tito_Scwrl_2JD3.pdb
: