Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MATKSNIIMKVAKRHPLLDRIVIAAIVNRFFEILSSTLEHHNRVEIRGFGSFSIRSY------NLKETSHLMLQKFAKNQYFKTYFRSSKKLSDLINE
2IIE Chain:A ((46-136))
GLTKAEMSEYLFDKL-GLSKRDAKELVELFFEEIRRALENGEQVKLSGFGNFDLRDKNQRPGRNPKTGEDIPI-----TARRVVTFRPGQKLKSRVEN
General information:
TITO was launched using:
RESULT:
Template:
2IIE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28260 for 447 contacts (-63.2/contact) +
2D Compatibility (PS) -8854 + (NN) -410 + (LL) 384
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -39790.0 ( -89.02 by residue)
QMean score : 0.426
(partial model without unconserved sides chains):
PDB file :
Tito_2IIE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IIE-query.scw
PDB file :
Tito_Scwrl_2IIE.pdb
: