Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGDAVKVIAEELKGYIERIEKLEQEKKNVQ-----DQIHDVYAKAADKGWNIKVMKQIIRLRKMEDGDRAEQEILLNTYKRALGMSCEEN
4YVQ Chain:A ((1-89))
-MLETVPTIKKLRAYAERIRVAELEKCMSKMGDDINKKTTRAVDDLSRGIVNRFLHGPMQ--HLRCRTLSETLENMHALNRMYGLEK---
General information:
TITO was launched using:
RESULT:
Template:
4YVQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7562 for 448 contacts (-16.9/contact) +
2D Compatibility (PS) -8977 + (NN) -8127 + (LL) 612
1D Compatibility (HY) 800 + (ID) 600
Total energy: -23854.0 ( -53.25 by residue)
QMean score : 0.633
(partial model without unconserved sides chains):
PDB file :
Tito_4YVQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YVQ-query.scw
PDB file :
Tito_Scwrl_4YVQ.pdb
: