Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGDTPFKATSMEDLNDTISKIINYRFKNDAILEEALTHPSLNKRNSKNQIENYERLEFLGDSILNMIVSAILFRLFPKEKEGALARRKTDLVCGNTIANVAKEIKLGNFIIMNNSERCNGGKRNLKNLENALEALIGAIYIDGGF-AN-VKKFVTKHWEERAKGMLS---LPQDPKTSLQEWTQKNKLPLPEYELMKQTGPAHSPEFTISICIENYGKVFACASSKKVAEQKAAELMLEKINNSEKTI
1YYK Chain:B ((5-221))
---------------EQLEKKLGYTFKDKSLLEKALTHVSYSKK------EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFI------RIKRGKINETIIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLEESE---
General information:
TITO was launched using:
RESULT:
Template:
1YYK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -85811 for 1552 contacts (-55.3/contact) +
2D Compatibility (PS) -23171 + (NN) -10490 + (LL) 1244
1D Compatibility (HY) -16400 + (ID) 3950
Total energy: -138578.0 ( -89.29 by residue)
QMean score : 0.570
(partial model without unconserved sides chains):
PDB file :
Tito_1YYK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YYK-query.scw
PDB file :
Tito_Scwrl_1YYK.pdb
: