Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIDFNIINNMININTKRQITGFFVYIIGFSGSGKLSTAIELSNMIDALIVNSNFSNNTQVCSIYDNVFEHNHIPEEVQDRIYNIAQIMLQAIEAYLIHSKNYIFIDELMKNNDHNTKMYNSVVELSKRMNTQILPIVLRCDLLTLQKRIKLKRQRENKKA-TNISSIIENFRTH-DSFIPPNAIEIENSNMSIKEVAEKITSQMHKLSQINSIYTKG
2IYV Chain:A ((2-172))
---------------------APKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADI--FAT--DG-E---QEFRRIEEDVVRAALADHDGVLSLGGGA----VTSPGVRAAL-------AGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMAKRAPLYRRVATMRVDTNRRNPGAVVRHILSRLQVPSPSEAATLEH
General information:
TITO was launched using:
RESULT:
Template:
2IYV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117385 for 1304 contacts (-90.0/contact) +
2D Compatibility (PS) -17677 + (NN) -2692 + (LL) 2696
1D Compatibility (HY) 800 + (ID) 800
Total energy: -135058.0 ( -103.57 by residue)
QMean score : 0.405
(partial model without unconserved sides chains):
PDB file :
Tito_2IYV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IYV-query.scw
PDB file :
Tito_Scwrl_2IYV.pdb
: