Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MPKLSIVVAPDERLTTRASEVTGINDKIKELVNDMFETMYNAEGLGLAAVQIGVLKRIFVMDIQLEDIKGEPVGYESTGKFCMINPEITELSDEQVILKEGCLSIPEQSHEIRRPKYLTVKYKDLNNKEQTLKASGWLARCIQHELDHLNGILYI-RHLSKLKYDMAMKKAEKFKRHYER
4DR9 Chain:C ((17-177))
-PPLDLHYLGDRVLRQPAKRVSRIDDELRQTIRQMLQTMYSADGIGLAAPQVGINKQLIVIDLELEDEQAPP--------LVLINPKIERTAGDLEQCQEGCLSIPGVYLDVERPEIVEVSYKDENGRPQRLVADGLLARCIQHEMDHLNGVLFVDRVENRLELNEALDKKGFAVQAVRP
General information:
TITO was launched using:
RESULT:
Template:
4DR9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99972 for 1199 contacts (-83.4/contact) +
2D Compatibility (PS) -16841 + (NN) -148 + (LL) 340
1D Compatibility (HY) -15600 + (ID) 3350
Total energy: -135571.0 ( -113.07 by residue)
QMean score : 0.430
(partial model without unconserved sides chains):
PDB file :
Tito_4DR9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DR9-query.scw
PDB file :
Tito_Scwrl_4DR9.pdb
: