Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNGTVNKVILVGNLGRNPEIRTMQNGKEMANFSIATSEGWTDKFSGVRSEKTEWHNIVIFSEGLVKVVKDFVRKGSKVYIEGSLKTRKWTDQNGSERYTTEVVLQNFNGTLTLLDSRNNAASSDYKSNEYKQDETGQKDQYENFDSEVKEELIDDEIPF
3PGZ Chain:A ((23-136))
--AGSLNKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRDR-----KERTEWHNIVIFNENLVKVVEQYLKKGSKIYIEGQLQTRKWQDQNGNDRYTTEIVLQKYRGELQMLD--------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3PGZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -56534 for 701 contacts (-80.6/contact) +
2D Compatibility (PS) -11665 + (NN) -1356 + (LL) 2276
1D Compatibility (HY) -14400 + (ID) 3450
Total energy: -85129.0 ( -121.44 by residue)
QMean score : 0.646
(partial model without unconserved sides chains):
PDB file :
Tito_3PGZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3PGZ-query.scw
PDB file :
Tito_Scwrl_3PGZ.pdb
: