Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANVSSDTELIKSTIMSIIDQ-NKGRDIVTFDVQNKTIIA--KYMIIASGDSSRHVKALAEHVMKSLKQYYKMDVEGMDEGNWVILNFQGIMVHIFRPEVREYYKIEELWN
2WP4 Chain:A ((67-127))
---------RTLMSIIGRCEDKAEGVRVAVAHRTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEVPIWKKEFSS-------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2WP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26502 for 339 contacts (-78.2/contact) +
2D Compatibility (PS) -6179 + (NN) -3227 + (LL) 2952
1D Compatibility (HY) 0 + (ID) 500
Total energy: -33456.0 ( -98.69 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_2WP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WP4-query.scw
PDB file :
Tito_Scwrl_2WP4.pdb
: