Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNINIFVFLALSFVTSFNSIQAQILYTWSQVIPDNKLSVRAIIDSNTCPVAYVDGKGVEMLNRSSINNGDHTETICEMIVETGAQNISIDGIQVPILPEKISRIAFIGDTGCRINALFQQECNSVDSWPFKKNLDSIAL--HEPDLIVHVGDYHYRKTKCRNAQKCGNIYGYNKEAWYADWFEPAKDILLQSSFLFVRGNHENCDRAYEG----WFRYLDSHPFSSEKCENFVPGWF-LDIGPMKFFIFDSSSGEDIFTTQSTIDAFEKQFDKLTQDSSDKPTWFLTHRPLWRSPKKEFLTLKSHGNLTQIEAFGDKFP-NNVATIVSGHIH-IAQILLMNNVPDQIIVGNGGALLHAQDQEPVY-----QNIEFSYSNGKNYLAHEIKNFFGFGFSILNLDNHEFTFYDQNNEEMYSAKLTEDFKLEIN--------- |
| 4KBP Chain:A ((121-432)) | ----------------------------------------------------------------------------------------------QTGLDVPYTFGLIGDLG--------------QSFDSNTTLSHYELSPKKGQTVLFVGDLSYADR-----------YPNHDNVRWDTWGRFTERSVAYQPWIWTAGNHEIEFAPEINETEPFKPFSYRYHVPYEASQSTSPFWYSIKRASAHIIVLSSYSAYG--RGTPQYTWLKKELRKVKRSET-PWLIVLMHSPLYNSYNH-----HFMEGEAMRTKFEAWFVKYKVDVVFAGHVHAYERSERVSNIAYKITDGLCTPVKDQSAPVYITIGDAGNYGVIDSNMIQPQPEYSAFREASFGHGMFDIKNRTHAHFSWNRNQDGVAVEADSVWFFNRHWYPVDDST |
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General information:
TITO was launched using:
| RESULT:
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Template: 4KBP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -53972 for 2395 contacts (-22.5/contact) +
2D Compatibility (PS) -30531 + (NN) -7865 + (LL) 9384
1D Compatibility (HY) -6000 + (ID) 2150
Total energy: -91134.0 ( -38.05 by residue)
QMean score : 0.314
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