Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSEKIELIFEKLKQSNPI-PKIELSYTNHFTLLVAIVLSARTTDVSVNKITKELFSIANTPEKMLNLGQSELKKHISSIGLYNSKAKNIIELSRILVERHTSKVPTNFDDLVSLPGVGRKSANVFLNSGLGIPTLAVDTHVFRVSNKIGLVKE-KDVF----KTEKSLLNVVPKKYLLYAHHWLVLHGRYVCKAQKPSCKTCIIHDLCEFECKRYKV
1KG2 Chain:A ((4-214))
---SQFSAQVLDWYDKYGRKTLPWQIDKTPYKVWLSEVMLQQTQVATVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYY-ARARNLHKAAQQVATLHGGKFPETFEEVAALPGVGRSTAGAILSLSLGKHFPILDGNVKRVLARCYAVSGWPGKKEVENKLWSLSEQVTPAVGVERFNQAMMDLGAMICTRSKPKCSLCPLQNGCIAAANNSWA
General information:
TITO was launched using:
RESULT:
Template:
1KG2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99661 for 1578 contacts (-63.2/contact) +
2D Compatibility (PS) -21604 + (NN) -12374 + (LL) 24
1D Compatibility (HY) -4000 + (ID) 1950
Total energy: -139565.0 ( -88.44 by residue)
QMean score : 0.508
(partial model without unconserved sides chains):
PDB file :
Tito_1KG2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KG2-query.scw
PDB file :
Tito_Scwrl_1KG2.pdb
: