Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSPCPRAKVCFSPGE---DCAVLIISEIDQSK----ESVLVQEYTFTLETIARALINAKERSVDVEVILDKSQLHSKYSVINKLFSNG--IPVWIDDKPKIAHNKVIIVDNQ---KVITGSFNLTKTAKKGNAENLLIIKNYPELVQQYVKNWEIRKSQSYKYAS
1XDP Chain:A ((501-646))
--------YLMVSPQNSRRLLYEMVDREIANAQQGLPSGITLKLNNLVDKGLVDRLYAASSSGVPVNLLVRGMCSLI-----PNLEGISDNIRAISIVDRYLEHDRVYIFENGGDKKVYLSSADWMTRNIDYRIEVATPLLD-PRLKQRVLDIIDILFSDTVKARY
General information:
TITO was launched using:
RESULT:
Template:
1XDP.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30980 for 1016 contacts (-30.5/contact) +
2D Compatibility (PS) -14671 + (NN) -1787 + (LL) 992
1D Compatibility (HY) -8400 + (ID) 1150
Total energy: -55996.0 ( -55.11 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_1XDP.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XDP-query.scw
PDB file :
Tito_Scwrl_1XDP.pdb
: