Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKISKFVFLFLFCLGFNLQASGTLNIEEVITRKGFKFLFVENCDLPKVSLNISFKDAGYAYENVEKQGLTWFTSLAIQEGAGKNDAKDFAKKLEDKGISLNFIAGLEAFRASLNTLSENLEEAVSLLSDAIMHPKVDLEGLNRAFEKAKVNFNNLEKDPYFIAGKELNTLLFKKHPYSKSEYGILDTIMSITRDDVLAYVKRNFTKDNIVISVVGCTTKEEVSALLDKYLSKLPLKRSKV--RKIPVKNNFGPAESKNIFMDIPQSVIFFAQKGIAYEDPDYYSASVLINALGGM--------GLNSILMKELRQNLGITYGVFAHIIPNKHGNAIVGNMSTDSSTAGKAILAVKDTLSRIKREGIDEQLFKDAKTILVNNLTFFLSNNTNTAMLLDDMQ-INDRDVNRINNYADIINDVKLEKVNELASSLLDPENLFFVKVGRNT |
| 1PP9 Chain:A ((9-428)) | --------------------QSVPETQVSQLDNGLRVASEQSS-QPTCTVGVWID-AGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQI-CHREDGLPLAHVAIAVEGPGWAHPDNVALQVANAIIGHYDCTYGGGAHLSSPLAS-IAATNKLCQSFQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLC-TSATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRR-IPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAGFGPIE |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PP9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -149816 for 3462 contacts (-43.3/contact) +
2D Compatibility (PS) -43883 + (NN) -18588 + (LL) 2352
1D Compatibility (HY) -2800 + (ID) 3300
Total energy: -216035.0 ( -62.40 by residue)
QMean score : 0.452
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