Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSDDKEERLLS--------EKHKSNPSMAVKWQRNIFTKTESQSSSKLYLVDLAKKSHKIISTPTSAYLPDWSHF-------------------------
4RT5 Chain:A ((14-114))
LKLDDLHHIAISVTDVAQSVEWYTSHFQCRIAYQDSTWALLKFGNLSLALVIPEQHPPHIAFTSDRAGEYGSLKTHRDGTRSCYIQDPSGNSVELMDPTSL
General information:
TITO was launched using:
RESULT:
Template:
4RT5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 21791 for 343 contacts (63.5/contact) +
2D Compatibility (PS) -6616 + (NN) 2272 + (LL) 0
1D Compatibility (HY) -2000 + (ID) 450
Total energy: 14997.0 ( 43.72 by residue)
QMean score : 0.138
(partial model without unconserved sides chains):
PDB file :
Tito_4RT5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RT5-query.scw
PDB file :
Tito_Scwrl_4RT5.pdb
: