Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MENKLREIVLDTETTGLDIESGHRIIEIGCVELI---NRIPT-GKVFHKYLNP--ERDIPYHSFKIHGISEEFLE-DKPLFSDVVFEFLDFIS---------GDILIIHNAEFDIKFLNMELGKLNARL--ISSDRVLDTLPLARKKFVGSPASLSALCKRFDISLENRELHGALTDAGLLAKVYVELTGGLQTFLFDNECKQDHNSAFIQHKVRNLTCREHSPSNEEINEHRKLLGKIDNPLWKERIE
3V9W Chain:A ((35-228))
--RGFYPVVIDVETAGFNAKT-DALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSGYEALHEIFKVVRKGIKASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALG--QTVLSKACQTAGMDFDSTQAHSALYDTERTAVLFCEIVNRWKRLGGWPLS------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3V9W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113828 for 1355 contacts (-84.0/contact) +
2D Compatibility (PS) -18615 + (NN) -4607 + (LL) 2716
1D Compatibility (HY) -6000 + (ID) 1650
Total energy: -141984.0 ( -104.79 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_3V9W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V9W-query.scw
PDB file :
Tito_Scwrl_3V9W.pdb
: