Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNRSTDTKRKEMIELKGPEICTDRSRENLIVCLHGRGSSGNNFVHLAKV-----MSKSLPNSCFVAPNAPSKREIG----NGYQWFSLEDRS--EEVLYNGVKNAASIVNHFIDTKLKEFSLKDTQLSLVGFSQGAMLAIHTALTRPQCCASVVAYSGKFLSPSRVA----PKIKSRPNVCVIHGDADNVVPFSFFDLTVKALKENGVNVEGYPIRTLGHLINKEGIKLGVEFIKKNFKK
3U0V Chain:A ((18-230))
------------------------GRHSASLIFLHGSGDSGQGLRMWIKQVLNQDLTF--QHIKIIYPTAPPRSYTPMKGGISNVWFDRFKITNDCPEHLESIDVMCQVLTDLIDEEVK-SGIKKNRILIGGFSMGGCMAMHLAYRNHQDVAGVFALSSFLNKASAVYQALQKSNGVLPELFQCHGTADELVLHSWAEETNSMLKSLGVTTKFHSFPNVYHELSKTELDILKLWILTKLP-
General information:
TITO was launched using:
RESULT:
Template:
3U0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -128114 for 1637 contacts (-78.3/contact) +
2D Compatibility (PS) -21096 + (NN) -8252 + (LL) 1836
1D Compatibility (HY) -10000 + (ID) 2250
Total energy: -167876.0 ( -102.55 by residue)
QMean score : 0.510
(partial model without unconserved sides chains):
PDB file :
Tito_3U0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U0V-query.scw
PDB file :
Tito_Scwrl_3U0V.pdb
: