Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFVNGGQLKKINQKWLIIGTGLLLFMMMLPSIILLAKMTIGLVMVLVVAIAIKIASKTISNVLEDKQADPNQLTSQTTQSRIINLAVGLVSIFTGGLSLLIIAKTGIAVICAAVVTLAIYEYAKDYKYAEDKEIGKSINDKLDEIAKNTTNFIVSGIEKLVSPQEQQV
1HGV Chain:A ((1-46))
-----------------------------------------------------------------MDFNPSEVASQVTNY------------------IQAIAAAGVGVLALAIGLSAAWKYAKRFLKG---------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1HGV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5249 for 193 contacts (-27.2/contact) +
2D Compatibility (PS) -4834 + (NN) -2541 + (LL) 10648
1D Compatibility (HY) -1200 + (ID) 650
Total energy: -3826.0 ( -19.82 by residue)
QMean score : 0.153
(partial model without unconserved sides chains):
PDB file :
Tito_1HGV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HGV-query.scw
PDB file :
Tito_Scwrl_1HGV.pdb
: