Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNKEKLFYTIGEVAEELHLEQHVLRFWESQFRQIKPIKR--KGRRLYDHKCIEVIKKIKYMLYDKGYTIKGVQKEFDNNIKSSCNFGNLLPQLIDLRDYLINKINSEKSNEQL
3QAO Chain:A ((2-75))
-----NAMQIKELAELTGVSVRTLHHYDKI-GLLVPQKDDWNGYRIYSEKDVDKLQQILF-FKELDFPLKKIQQILDDPLFDKNVALDMQRHLLIEKKQRIETMLATLDLTIK
General information:
TITO was launched using:
RESULT:
Template:
3QAO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37527 for 462 contacts (-81.2/contact) +
2D Compatibility (PS) -7512 + (NN) -533 + (LL) 700
1D Compatibility (HY) -4000 + (ID) 750
Total energy: -49622.0 ( -107.41 by residue)
QMean score : 0.494
(partial model without unconserved sides chains):
PDB file :
Tito_3QAO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QAO-query.scw
PDB file :
Tito_Scwrl_3QAO.pdb
: