Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLNLFNNNQVDYSRQNYIILDENKHIYNAVINDLS----WKYLFLFGPKGSGKTHLAHIWQSINN-------AIFINVNNFI----------------SEI-RYSNAFILEDVQDIQ----DEATLLHCYNYMKENNKRLLITSSTSPKRLNFKLKDLSSRILSTISAKIPSASEELLRIMLIKRFSDKQLKVDLKVINYILARIERSFCSINRIIEKIDNGS--MGSNVTIPFVSTLLKRDTT
2Z4S Chain:A ((96-330))
------TPLNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKDFIK
General information:
TITO was launched using:
RESULT:
Template:
2Z4S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -150190 for 1608 contacts (-93.4/contact) +
2D Compatibility (PS) -21083 + (NN) -5592 + (LL) 732
1D Compatibility (HY) -10400 + (ID) 2250
Total energy: -188783.0 ( -117.40 by residue)
QMean score : 0.377
(partial model without unconserved sides chains):
PDB file :
Tito_2Z4S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2Z4S-query.scw
PDB file :
Tito_Scwrl_2Z4S.pdb
: