Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHASTGKGSKIKYSRVLFKISGEALMGSRPFGHDMELIDQLCKDISDIYKLGVQVCIVVGGGNIFRGASASLSGCERASSDYIGMLATIINALILQNFLEKNSVNSKVLSAIPMVTICEPYIRRKAIHHLEKGRVVIFAAGTGNPFFTTDTAAALRAVETNCDAILKGTQVNGVYSADPKKNEDAVMYDRLSYMDLLTRDLKVVDASAISLARENSIPIIVFSL-KEEKIVNIVKGHGTYTIVSDCE
2BND Chain:B ((5-241))
--------AKPVYKRILLKLSGEALQGTE-FGIDASILDRMAQEIKELVELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSAIPLNAVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALRRVVMGEKEGTLITE--
General information:
TITO was launched using:
RESULT:
Template:
2BND.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -228028 for 2019 contacts (-112.9/contact) +
2D Compatibility (PS) -26433 + (NN) -15580 + (LL) 160
1D Compatibility (HY) -22800 + (ID) 5150
Total energy: -297831.0 ( -147.51 by residue)
QMean score : 0.534
(partial model without unconserved sides chains):
PDB file :
Tito_2BND.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2BND-query.scw
PDB file :
Tito_Scwrl_2BND.pdb
: