Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTVYGHRGLPSKAPENTIASFKAASEVEGINWLELDVAITKDEQLIIIHDDYLERTTNMSGEITELNYDEIKDASAGSWFGEKFKDEHLPTFDDVVKIANEYNMNLNVELKGITGPNGLALSKSMVKQVEEQLTNLNQNQEVLISSFNVVLVKLAEEIMPQYNRAVIFHTTSFREDWRTLLDYCNAKIVNTEDAKLTKAKVKMVKEAGYELNVWTVNKPARANQLANWGVDGIFTDNADKMVHLSQ
2OTD Chain:A ((6-245))
YPRIVAHRGGGKLAPENTLAAIDVGAK-YGHKMIEFDAKLSKDGEIFLLHDDNLERTSNGWGVAGELNWQDLLRVDAGSWYSKAFKGEPLPLLSQVAERCREHGMMANIEIKPTTGTGPL--TGKMVALAARQLW--AGMTPPLLSSFEIDALEAAQQAAPELPRGLLLDEW--RDDWRELTARLGCVSIHLNHKLLDKARVMQLKDAGLRILVYTVNKPQHAAELLRWGVDCICTDAIDVIGPNFT
General information:
TITO was launched using:
RESULT:
Template:
2OTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -78202 for 2125 contacts (-36.8/contact) +
2D Compatibility (PS) -26060 + (NN) -10283 + (LL) 712
1D Compatibility (HY) -12800 + (ID) 4150
Total energy: -130783.0 ( -61.54 by residue)
QMean score : 0.477
(partial model without unconserved sides chains):
PDB file :
Tito_2OTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OTD-query.scw
PDB file :
Tito_Scwrl_2OTD.pdb
: