Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNDNEKRVLREIYNHHNISRTQISKNLEINKATISSILNKLKYKSLVNEVGEGDSTKSGGRKPILLKVNHLYGYFISLDLTYSSVEVMYNYFDGNVIKHESYDLPDEKVSSILSIIKK-HIDIQEKLDTYNGLLGVSVSIHGVVDNEQH-VTYLPFHETEGISIAKKIKEITNVPVVVENEANLSALYERNFNHNLSYNNLIALSIHKGIGAGLIINNQLYRGANGEAGEIGKTLVSKVS----------DNV-E-IFHKIEDIFSQEALLHNLSNQLNEKMTLSKLIQFYNEKNPVVVEEMEQFINKIAVLIHNLNTQFNPNAIYINCPLFNEMPEILEAIKNQFKQYS---RNEIQIKLTSNVKFATLLGGTLAIIQKVLQINDIYLDIKA
2AP1 Chain:A ((23-326))----------------------------------------------------------------------NA-MYYGFDIGGTKIALGVFDSTRRLQWEKRVPTPHTSYSAFLDAVCELVEEADQ---RFGVKGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVLNGKPITGQSYITGEFGHMRLPVDALTLMGFDFPLRRCGCGQMGCIENYLSGRGFAWLYQHYYDQSLQAPEIIALWEQGDEQAHAHVERYLDLLAVCLGNILTIVDPDLLVIGGGLSNF-TAITTQLAERLPRHLLPVARAPRIERARHGDAGGMRGAAFLHLT--------------


General information:
TITO was launched using:
RESULT:

Template: 2AP1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180627 for 2480 contacts (-72.8/contact) +
2D Compatibility (PS) -30538 + (NN) -11417 + (LL) 5580
1D Compatibility (HY) -12000 + (ID) 2150
Total energy: -231152.0 ( -93.21 by residue)
QMean score : 0.491

(partial model without unconserved sides chains):
PDB file : Tito_2AP1.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2AP1-query.scw
PDB file : Tito_Scwrl_2AP1.pdb: