Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNDNEKRVLREIYNHHNISRTQISKNLEINKATISSILNKLKYKSLVNEVGEGDSTKSGGRKPILLKVNHLYGYFISLDLTYSSVEVMYNYFDGNVIKHESYDLPDEKVSSILSIIKK-HIDIQEKLDTYNGLLGVSVSIHGVVDNEQH-VTYLPFHETEGISIAKKIKEITNVPVVVENEANLSALYERNFNHNLSYNNLIALSIHKGIGAGLIINNQLYRGANGEAGEIGKTLVSKVS----------DNV-E-IFHKIEDIFSQEALLHNLSNQLNEKMTLSKLIQFYNEKNPVVVEEMEQFINKIAVLIHNLNTQFNPNAIYINCPLFNEMPEILEAIKNQFKQYS---RNEIQIKLTSNVKFATLLGGTLAIIQKVLQINDIYLDIKA |
2AP1 Chain:A ((23-326)) | ----------------------------------------------------------------------NA-MYYGFDIGGTKIALGVFDSTRRLQWEKRVPTPHTSYSAFLDAVCELVEEADQ---RFGVKGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVLNGKPITGQSYITGEFGHMRLPVDALTLMGFDFPLRRCGCGQMGCIENYLSGRGFAWLYQHYYDQSLQAPEIIALWEQGDEQAHAHVERYLDLLAVCLGNILTIVDPDLLVIGGGLSNF-TAITTQLAERLPRHLLPVARAPRIERARHGDAGGMRGAAFLHLT-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2AP1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -180627 for 2480 contacts (-72.8/contact) +
2D Compatibility (PS) -30538 + (NN) -11417 + (LL) 5580
1D Compatibility (HY) -12000 + (ID) 2150
Total energy: -231152.0 ( -93.21 by residue)
QMean score : 0.491
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