Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNYDKKMINRINRIQGQL----NGIIKMMEEGKDCKD--VITQISASKSSLQRLMGIIIS-------ENLIECVKVAADDEESS-----QELINEAVNLLVKSK
1PUL Chain:A ((18-120))
-NWDDADVKKRWDAFTKFGAATATEMTGKNFDKWLKDAGVLDNKAITGTMTGIAFSKVTGPKKKATFDETKKVLAFVAEDRARQSKKPIQDELDAITEKLAKLE
General information:
TITO was launched using:
RESULT:
Template:
1PUL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13689 for 508 contacts (-26.9/contact) +
2D Compatibility (PS) -9000 + (NN) -2134 + (LL) 208
1D Compatibility (HY) 1200 + (ID) 550
Total energy: -23965.0 ( -47.18 by residue)
QMean score : 0.380
(partial model without unconserved sides chains):
PDB file :
Tito_1PUL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PUL-query.scw
PDB file :
Tito_Scwrl_1PUL.pdb
: