Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEG-TELEHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNS--EEKGGVIDDIKAQWGTLDEFKNEFANKATTLFGSGWTWLVVNDGKLEIVTTPNQDNPLTEGKTPILLFDVWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQAAK
1XUQ Chain:B ((14-211))
---ELPNLPYAYDALEPHFDKETMNIHHTKHHNTYITNLNAALEGHAELADKSVEELVANLNEVPEAIRTAVRNNGGGHANHTFFWTILSPNGGGQPVGELATAIEAKFGSFDAFKEEFAKAGATRFGSGWAWLVVNNGELEVTSTPNQDSPLTEGKTPVIGLDVWEHAYYLNYQNRRPDYIGAFWNVVDWNAAEKRYQEA-
General information:
TITO was launched using:
RESULT:
Template:
1XUQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -68149 for 1539 contacts (-44.3/contact) +
2D Compatibility (PS) -20174 + (NN) -3351 + (LL) 548
1D Compatibility (HY) -19200 + (ID) 6000
Total energy: -116326.0 ( -75.59 by residue)
QMean score : 0.573
(partial model without unconserved sides chains):
PDB file :
Tito_1XUQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1XUQ-query.scw
PDB file :
Tito_Scwrl_1XUQ.pdb
: