Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----------------------------------------------------------MRLILIVIGLIFTALGIAGAVLPLLPTTPFLLVAVFCFARSSDRFYNWLINQKIYKEYVENFYLHRGYTLQQKIKILISLYIVIGFSIYMVDVLAVRVGLIIMVIIQTAVLFTFVK---TLPKSNHKIEE-----------------
4OMV Chain:A ((3-205))
AMLLYTKKDDIYSDIVRMILLIKGANAKIVDVSKEENSKHLEELNIITPNGNIPTLSTDDFAVYRLSVIIEAIEDLYPFPPMFP--------VFPKQRANARILLEYVNKTFLQNIIKLQSPDLDEKQANEIKMLMQRDIISTYKKIVSER---AQNINVLTLIITFVFYYFIKLKISIPTKDKNIIKEIKELLSEPNFIKTIKA
General information:
TITO was launched using:
RESULT:
Template:
4OMV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65427 for 677 contacts (-96.6/contact) +
2D Compatibility (PS) -11695 + (NN) 3524 + (LL) 1296
1D Compatibility (HY) -8000 + (ID) 1000
Total energy: -81302.0 ( -120.09 by residue)
QMean score : 0.300
(partial model without unconserved sides chains):
PDB file :
Tito_4OMV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OMV-query.scw
PDB file :
Tito_Scwrl_4OMV.pdb
: