Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIFSQNLFRCPTPTCIVCRNWESNFSLLGPTPQLALPVEFLFEILCVGAPD
1ZMA Chain:A ((38-52))
-----------RKTCPYCRKFAGTLS-------------------------
General information:
TITO was launched using:
RESULT:
Template:
1ZMA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1355 for 55 contacts (-24.6/contact) +
2D Compatibility (PS) -1585 + (NN) -1102 + (LL) 2532
1D Compatibility (HY) -1600 + (ID) 250
Total energy: -3360.0 ( -61.09 by residue)
QMean score : -0.127
(partial model without unconserved sides chains):
PDB file :
Tito_1ZMA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZMA-query.scw
PDB file :
Tito_Scwrl_1ZMA.pdb
: