Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEFTYSYLFRMISHEMKQKADQKLEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSLQ
4LLN Chain:C ((3-140))
-EFTYSYLFRMISHEMKQKADQKLEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYV--QDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSLQ
General information:
TITO was launched using:
RESULT:
Template:
4LLN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -39330 for 832 contacts (-47.3/contact) +
2D Compatibility (PS) -14287 + (NN) -4845 + (LL) 276
1D Compatibility (HY) -17600 + (ID) 6800
Total energy: -82586.0 ( -99.26 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_4LLN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4LLN-query.scw
PDB file :
Tito_Scwrl_4LLN.pdb
: