Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MWSFKSMFNTPEDPEKDAYEFYGKVQPGITTPTQKTCNFVALDLKS-KDRDAIKAMFKKWTVMADRMMDGDTVGKTSNNPLMPPVDTGESIGLGASKLTITFGISKSLMKKIGLSSKIPDAFKDLPHFPNDQLIDDYSDGDIMIQACSNDSQVSFHAVHNLVRPFRDIVKVRWAQSGFISAKGKE----TPRNLMAFKDGTINPRKSNQLKD-YVFIDD---GWAKHGTYCVVRRIQIHIETWDRTALEEQEATFGRKRHSGAPLTGGK---EFDEIDLKAKDSHGEYIIDKDAHTRLAK---EANTSILRRAFNYVDGTDDRTGNFETGLLFIAFQK-ATKQFIDIQNNLGSNDKLNEYITHRGSASFLVLPGVSKGGYLGETLFD |
| 4GT2 Chain:A ((102-464)) | --------------------FHGKHQPGITTPMQARGHLVAFDLAAGAGRKEAAALLRRWSDTARRLMAGEPAGSR---------DTDVARDAGPSSLTVTFGFGHSFFGRTGLEEQRPVALDPLPDFSSDHLDKNRSNGDLWVQIGADDALVAFHALRAIQRDAGAAARVRWQMNGFNRSPGATAHPMTARNLMGQVDGTRNPKPGEADFDRRIFVPEEGPAWMANGSYVVVRRIRMLLDDWEELSLKAQEDVIGRRKSDGAPLSGGSGATESTEMDLEKTDGSGELVVPINAHARITRPDQNGGAAMVRRPFSYHDGFDA-DGVPDAGLLFVCWQADPLRGFVPVQRKLDRGDALSQFIRHEASGLFAVPGGAAEGEYVGQRLLE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GT2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -111294 for 2861 contacts (-38.9/contact) +
2D Compatibility (PS) -36720 + (NN) -17764 + (LL) 1064
1D Compatibility (HY) -19200 + (ID) 6400
Total energy: -190314.0 ( -66.52 by residue)
QMean score : 0.468
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