Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFKKVLVATAMVGVLATGVVGYGNQADAKVYSQNGLVLHDDANFLEHELSYIDVLLDKNADQATKDNLRSYFADKGLHSIKDIINKAKQDGFDVSKYEHVK
1JUB Chain:A ((279-309))
----------------------------------------------------------PAIFDRIIKELEEIMNQKGYQSIADFHGKLK-------------
General information:
TITO was launched using:
RESULT:
Template:
1JUB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -3882 for 124 contacts (-31.3/contact) +
2D Compatibility (PS) -3263 + (NN) -660 + (LL) 5172
1D Compatibility (HY) -2000 + (ID) 400
Total energy: -5033.0 ( -40.59 by residue)
QMean score : 0.696
(partial model without unconserved sides chains):
PDB file :
Tito_1JUB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JUB-query.scw
PDB file :
Tito_Scwrl_1JUB.pdb
: