Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNSRDQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEKI
4DWJ Chain:C ((26-228))
-SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNS-DQNRLDQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIKYLEK-
General information:
TITO was launched using:
RESULT:
Template:
4DWJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92152 for 1620 contacts (-56.9/contact) +
2D Compatibility (PS) -22372 + (NN) -12182 + (LL) 512
1D Compatibility (HY) -28800 + (ID) 10100
Total energy: -165094.0 ( -101.91 by residue)
QMean score : 0.700
(partial model without unconserved sides chains):
PDB file :
Tito_4DWJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DWJ-query.scw
PDB file :
Tito_Scwrl_4DWJ.pdb
: