Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIQAYLGLGSNIGDRESQLNDAIKILNEYDGISVSNISPIYETAPVGYTEQPNFLNLCVEIQTTLTVLQLLECCLKTEECLHRIRKERWGPRTLDVDILLYGEEMIDLPKLSVPHPRMNERAFVLIPLNDIAANVVEPRSKLKVKDLVFVDDSVKRYK
1CBK Chain:B ((1-142))
MITAYIALGSNLNTPVEQLHAALKAISQLSNTHLVTTSSFYKSKPLGPQDQPDYVNAVAKIETELSPLKLLDELQRIENEQGRVRLRRWGERTLDLDILLYGNEIIQNERLTIPHYDMHNREFVIVPLFEIASDLVLPNSQI----------------
General information:
TITO was launched using:
RESULT:
Template:
1CBK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96411 for 1088 contacts (-88.6/contact) +
2D Compatibility (PS) -14744 + (NN) -5198 + (LL) 1268
1D Compatibility (HY) -13200 + (ID) 2850
Total energy: -131135.0 ( -120.53 by residue)
QMean score : 0.491
(partial model without unconserved sides chains):
PDB file :
Tito_1CBK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1CBK-query.scw
PDB file :
Tito_Scwrl_1CBK.pdb
: