Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILT-------HEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
4EGG Chain:E ((95-183))
-----------------------------------------------------------------------------ITIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGEGSVIGAGSVVTKDIPPHSLAVGNP--CKVVRK
General information:
TITO was launched using:
RESULT:
Template:
4EGG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62216 for 554 contacts (-112.3/contact) +
2D Compatibility (PS) -9249 + (NN) -3709 + (LL) 7248
1D Compatibility (HY) -7200 + (ID) 1900
Total energy: -77026.0 ( -139.04 by residue)
QMean score : 0.539
(partial model without unconserved sides chains):
PDB file :
Tito_4EGG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EGG-query.scw
PDB file :
Tito_Scwrl_4EGG.pdb
: