Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEYLLSAGICMAIVSILLIGMAISNVSKGQYAKRFFFFATSCLVLTLVVVSSLSSSANASQTDNGVNRSGSEDPTVYSATSTKKLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENANKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKPNNTHEQLLRKSEAQAKKEKLNIWSEDNADSGQ
1SYF Chain:A ((6-141))
------------------------------------------------------------------------------------KLHKEPATLIKAIDGDTVKLMYKGQPMTFRLLLVDTPETKHPKKGVEKYGPEASAFTKKMVENAKKIEVEFDKGQRTDKYGRGLAYIYADGKMVNEALVRQGLAKVAYVYKTNNTHEQHLRKSEAQAKKEKLNIWS--------
General information:
TITO was launched using:
RESULT:
Template:
1SYF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45947 for 1060 contacts (-43.3/contact) +
2D Compatibility (PS) -14594 + (NN) -4603 + (LL) 5904
1D Compatibility (HY) -15600 + (ID) 6650
Total energy: -81490.0 ( -76.88 by residue)
QMean score : 0.585
(partial model without unconserved sides chains):
PDB file :
Tito_1SYF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SYF-query.scw
PDB file :
Tito_Scwrl_1SYF.pdb
: