Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHA--KNGY-YDGITFHRVINDFMIQGGDPTAT-GMGGESIYGGAFEDE-FSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
2RMC Chain:E ((22-163))
------------------------GRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGI-GWVSMANAGPDTNGSQFFITLTKPT----------------------------WLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTI-------
General information:
TITO was launched using:
RESULT:
Template:
2RMC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45056 for 1015 contacts (-44.4/contact) +
2D Compatibility (PS) -14482 + (NN) -6854 + (LL) 3000
1D Compatibility (HY) -12800 + (ID) 3850
Total energy: -80042.0 ( -78.86 by residue)
QMean score : 0.504
(partial model without unconserved sides chains):
PDB file :
Tito_2RMC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RMC-query.scw
PDB file :
Tito_Scwrl_2RMC.pdb
: