Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKDLPIIALDFESKEKVNQFLDLFD-ESLFVKVGMELFYQEGPQLINEIKERGHDVFLDLKLHDIPNTVGKAMEGLAKLNVDLVNVHAAGGVKMMSEAIKGLRKHNQHTK-IIAVTQLTST-TEDMLRHEQNIQTSIEEAVLNYAKLANAAGLDGVVCSPLESRMLTEKLGTSFLKVTPGIRPKGASQDDQHRITTPEEARQLGSTHIVVGRPITQSDNPVESYHKIKESWLV
1EIX Chain:D ((18-240))
-----VVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQRGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLV--DLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINAS---
General information:
TITO was launched using:
RESULT:
Template:
1EIX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -114592 for 1870 contacts (-61.3/contact) +
2D Compatibility (PS) -24213 + (NN) -12807 + (LL) 900
1D Compatibility (HY) -15200 + (ID) 4650
Total energy: -170562.0 ( -91.21 by residue)
QMean score : 0.632
(partial model without unconserved sides chains):
PDB file :
Tito_1EIX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1EIX-query.scw
PDB file :
Tito_Scwrl_1EIX.pdb
: