Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKKLINKKNTINNYNEELDSSNIPEHIAIIMDGNGRWAKKRKMPRIKGHYEGMQTIKKITRIASDIGVKYLTLYAFSTENWSRPESEVNYIMNLPVNFLKTFLPELIEKNVKVETIGFTDKLPKSTIEAINNAKEKTANNTGLKLIFAINYGGRAELVHSIKNMFDELHQQGLNSDIIDETYINNHLMTKDYPDPELLIRTSGEQRISNFLIWQVSYSEFIFNQKLWPDFDEDELIKCIKIYQSRQRRFGGLSEE
4H3C Chain:A ((20-239))
--------------------------HVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAF---------------MELFVWALDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQIDEEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANR----------
General information:
TITO was launched using:
RESULT:
Template:
4H3C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101090 for 1527 contacts (-66.2/contact) +
2D Compatibility (PS) -21400 + (NN) -5273 + (LL) 2452
1D Compatibility (HY) -15600 + (ID) 4250
Total energy: -145161.0 ( -95.06 by residue)
QMean score : 0.608
(partial model without unconserved sides chains):
PDB file :
Tito_4H3C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4H3C-query.scw
PDB file :
Tito_Scwrl_4H3C.pdb
: