Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSSNELLLATEYLEKEKKIPRAVLIDAIEAALITAYK-KNYDSARNVRVELNMDQG-----TFKVIARKDVVEEVFDDRDEVDLSTALVKNPAYEIGDIYEEDVTPKDFGRVGAQAAKQAVMQRLRDAEREILFEEFIDKEEDILTGIIDRVDHRYVYVNLGRIEAVLSEAERSPNEKYIPNERIKVYVNKVEQTTKGPQIYVSRSHPGLLKRLFEQEVP------EIYDGTVIVKSVAREAGDRSKISVFSENNDIDAV-GACVGAKGARVEAVVEEL-----GGEKIDIVQWNEDPKVFVKNAL--SPSQVLEVIVDETNQSTVVVVPDYQLSLAIGKRGQNARLAAKLTGWKIDIKSETDAREAGIYP---VVEAEKVTEEDIALEDADTTESTEEVNDVSVETNVEKESE |
| 3LD1 Chain:A ((5-363)) | -LRDVILVS-------KDIPEQLCDALF---FYTSHNPKDYADAFAVRQKFDRNLQTGKQFKFETVCGLFLLKGVDKITPGVPAKVLKATSKLADLEDIFGVSPFARKYRELLKTACQWSLTVETLDARALTLDEIF-DPTEILWLQVAAK-----IQVSAMAMRRLVGEVTAKVMDAL--GSNMSALFQIFKQQ---------------IVRIFQAALAIFENVSELPQRIAALKMAFAKCAKSITVVVMERTLVVREFAGTCLASINGAVAKFFEELPNGFMGAKIFTTFAFFREAAVKIVDNIPNAPRGTKGFEVVGNAKGTQVVVRGMRNDLTLLD--QKAEIPVESEGWSAILGG----HLCYVFKSGDRFYAAPLSG-NFALHDVHCCERVVCL-------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LD1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 21321 for 2529 contacts (8.4/contact) +
2D Compatibility (PS) -34835 + (NN) 7002 + (LL) 3352
1D Compatibility (HY) -18800 + (ID) 2750
Total energy: -24710.0 ( -9.77 by residue)
QMean score : 0.201
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