Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKAINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLN---KTEDFAKLVDQTTLDLTYKADKGQC-VILDNEDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDNQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVSQIK
1KDT Chain:B ((8-222))
-----ITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASED-ALVPLASHLDVRFVSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQEKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQ--
General information:
TITO was launched using:
RESULT:
Template:
1KDT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60317 for 1667 contacts (-36.2/contact) +
2D Compatibility (PS) -22625 + (NN) -6673 + (LL) 940
1D Compatibility (HY) -14000 + (ID) 4250
Total energy: -106925.0 ( -64.14 by residue)
QMean score : 0.507
(partial model without unconserved sides chains):
PDB file :
Tito_1KDT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KDT-query.scw
PDB file :
Tito_Scwrl_1KDT.pdb
: