Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIGIIGAMEEEVTILKNKLTQLSEISVAHVKFYTGILKDREVVITQSGIGKVNAAISTTLLINKFKPDVIINTGSAGALDESLNVGDVLISDDVKYHDADATAFGYEYGQIPQMPVAFQSSKPLIEKVSQVVQQQQLTAKVGLIVSGDSFIGSVEQRQKIKKAFPNAMAVEMEATAIAQTCYQFNVPFVVVRAVSDLANGEAEMSFEAFLEKAAVSSSQTVEALVSQL
4F3C Chain:B ((19-245))
-IGIIGAMEEEVTLLRDKIDNRQTITLGGCEIYTGQLNGTEVALLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLASTLKVGDIVVSDETRYHDADVTAFGYEYGQLPGCPAGFKADDKLIAAAESCIRELNLNAVRGLIVSGDAFINGSVGLAKIRHNFPDAVAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQSTLMVETLVQKL
General information:
TITO was launched using:
RESULT:
Template:
4F3C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138063 for 2057 contacts (-67.1/contact) +
2D Compatibility (PS) -24597 + (NN) -10307 + (LL) 208
1D Compatibility (HY) -24800 + (ID) 6100
Total energy: -203659.0 ( -99.01 by residue)
QMean score : 0.622
(partial model without unconserved sides chains):
PDB file :
Tito_4F3C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F3C-query.scw
PDB file :
Tito_Scwrl_4F3C.pdb
: