Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIKIPRGTQDILPEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQSFGLKHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTNPMRILDCKVDRDKEAIK---TAPRITDFLNEESKAYYEQVKAYLDDLGIPYIEDPNLVRGLDYYTHTAFELMMDNPNYDGAITTLCGGGRYNGLLELLDGPSETGIGFALSIERLLLALEEEGIELDIEENLDLFIVTMGDQADRYAVKLLNHLRHNGIKADKDYLQRKIKGQMKQADRLGAKFTIVIGDQELENNKIDVKNMTTGESETIELDALVEYFKK |
4RDX Chain:A ((9-405)) | -----RGTKDLFGKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEK-----------EMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGMKVWP-QPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKELGLRRLKVKLSSVGDPEDRARYNAYLREVLSPHREALSEDSKERLELNPMRILDSKSERDQALLKELGVRP-MLDFLGEEARAHLKEVERHLERLSVPYELEPALVRGLDYYVRTAFEVHHEE---IGAQSALGGGGRYDGLSELLGGPRVPGVGFAFGVERVALALEAEGFGLPEEKGPDLYLIPLTEEAVAEAFYLAEALRPR-LRAEYALAPRKPAKGLEEALKRGAAFAGFLGEDELRAGEVTLKRLATGE--------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4RDX.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -161973 for 3007 contacts (-53.9/contact) +
2D Compatibility (PS) -41435 + (NN) -14139 + (LL) 2052
1D Compatibility (HY) -26800 + (ID) 8350
Total energy: -250645.0 ( -83.35 by residue)
QMean score : 0.558
|
|
|