Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKVVVQRVKEA--SVTNDTLN----NQIKKGYCLLVGIGQNSTEQDADVIAKKIANARLFEDDNNKLNFNIQQMNGEILSVSQFTLYADVKKGNRPGFSNSKNPDQAVKIYEYFNDALRAY--GLTVKTGEFGTHMNVSINNDGPVTIIYESQDGKIQ
4NBJ Chain:F ((1-159))
MRVVIQRVKGAILSVRK----LEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDNKTWDKNVKDLNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGPVTIYIDTHD----
General information:
TITO was launched using:
RESULT:
Template:
4NBJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60272 for 997 contacts (-60.5/contact) +
2D Compatibility (PS) -15836 + (NN) -7484 + (LL) 288
1D Compatibility (HY) -14800 + (ID) 3050
Total energy: -101154.0 ( -101.46 by residue)
QMean score : 0.575
(partial model without unconserved sides chains):
PDB file :
Tito_4NBJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NBJ-query.scw
PDB file :
Tito_Scwrl_4NBJ.pdb
: