Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSILTIILIALLVILLFRVGLSILRFLIYVGLVLLCIYLGYQGLIWLLDFFQINSGFLPHFQFNN
4U1R Chain:D ((26-55))
---------------------AVVRMGIYVGAKVYFIYEGYQGMV--------------------
General information:
TITO was launched using:
RESULT:
Template:
4U1R.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14463 for 92 contacts (-157.2/contact) +
2D Compatibility (PS) -2791 + (NN) -1225 + (LL) 4248
1D Compatibility (HY) -4000 + (ID) 550
Total energy: -18781.0 ( -204.14 by residue)
QMean score : 0.757
(partial model without unconserved sides chains):
PDB file :
Tito_4U1R.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U1R-query.scw
PDB file :
Tito_Scwrl_4U1R.pdb
: